پیوست ج — بستههای R مورد استفاده
عنوان اصلی: R Packages Used
منبع: https://christophm.github.io/interpretable-ml-book/r-packages.html
نویسنده: Christoph Molnar
مترجم: مریم محمودی
| بسته | نسخه | مرجع |
|---|---|---|
| base | 4.4.2 | R Core Team (2024a) |
| caret | 6.0.94 | Kuhn and Max (2008) |
| ceterisParibus | 0.4.2 | Biecek (2020) |
| DALEX | 2.4.3 | Biecek (2018) |
| data.table | 1.16.2 | Barrett et al. (2024) |
| e1071 | 1.7.16 | D. Meyer et al. (2024) |
| GGally | 2.2.1 | Schloerke et al. (2024) |
| glmnet | 4.1.8 | Friedman, Tibshirani, and Hastie (2010); Simon et al. (2011); Tay, Narasimhan, and Hastie (2023) |
| grid | 4.4.2 | R Core Team (2024b) |
| iml | 0.11.3 | Molnar, Bischl, and Casalicchio (2018) |
| infotheo | 1.2.0.1 | P. E. Meyer (2022) |
| interactions | 1.2.0 | Long (2024) |
| jpeg | 0.1.10 | Urbanek (2022) |
| kableExtra | 1.4.0 | Zhu (2024) |
| knitr | 1.48 | Xie (2014); Xie (2015); Xie (2024) |
| latex2exp | 0.9.6 | Meschiari (2022) |
| Metrics | 0.1.4 | Hamner and Frasco (2018) |
| mgcv | 1.9.1 | S. N. Wood (2003); S. N. Wood (2004); S. N. Wood (2011); S. N. Wood et al. (2016); S. N. Wood (2017) |
| nnet | 7.3.19 | Venables and Ripley (2002) |
| OneR | 2.2 | von Jouanne-Diedrich (2017) |
| palmerpenguins | 0.1.1 | Horst, Hill, and Gorman (2020) |
| partykit | 1.2.22 | Hothorn, Hornik, and Zeileis (2006); Zeileis, Hothorn, and Hornik (2008); Hothorn and Zeileis (2015) |
| patchwork | 1.3.0 | Pedersen (2024) |
| pre | 1.0.7 | Fokkema (2020) |
| randomForest | 4.7.1.2 | Liaw and Wiener (2002) |
| ranger | 0.17.0 | Wright and Ziegler (2017) |
| reshape2 | 1.4.4 | Wickham (2007) |
| rJava | 1.0.11 | Urbanek (2024) |
| rmarkdown | 2.29 | Xie, Allaire, and Grolemund (2018); Xie, Dervieux, and Riederer (2020); Allaire et al. (2024) |
| rpart | 4.1.23 | Therneau and Atkinson (2023) |
| RWeka | 0.4.46 | Witten and Frank (2005); Hornik, Buchta, and Zeileis (2009) |
| sbrl | 1.2 | Yang, Rudin, and Seltzer (2016) |
| tidyverse | 2.0.0 | Wickham et al. (2019) |
| tm | 0.7.14 | Feinerer, Hornik, and Meyer (2008); Feinerer and Hornik (2024) |
| viridis | 0.6.5 | Garnier et al. (2024) |
| yaImpute | 1.0.34.1 | Nicholas L. Crookston and Andrew O. Finley (2007) |
Allaire, JJ, Yihui Xie, Christophe Dervieux, Jonathan McPherson, Javier Luraschi, Kevin Ushey, Aron Atkins, et al. 2024. rmarkdown: Dynamic Documents for r. https://github.com/rstudio/rmarkdown.
Barrett, Tyson, Matt Dowle, Arun Srinivasan, Jan Gorecki, Michael Chirico, Toby Hocking, and Benjamin Schwendinger. 2024. data.table: Extension of "data.frame". https://CRAN.R-project.org/package=data.table.
Biecek, Przemyslaw. 2018. "DALEX: Explainers for Complex Predictive Models in r." Journal of Machine Learning Research 19 (84): 1–5. https://jmlr.org/papers/v19/18-416.html.
———. 2020. ceterisParibus: Ceteris Paribus Profiles. https://CRAN.R-project.org/package=ceterisParibus.
Feinerer, Ingo, and Kurt Hornik. 2024. tm: Text Mining Package. https://CRAN.R-project.org/package=tm.
Feinerer, Ingo, Kurt Hornik, and David Meyer. 2008. "Text Mining Infrastructure in r." Journal of Statistical Software 25 (5): 1–54. https://doi.org/10.18637/jss.v025.i05.
Fokkema, Marjolein. 2020. "Fitting Prediction Rule Ensembles with R Package pre." Journal of Statistical Software 92 (12): 1–30. https://doi.org/10.18637/jss.v092.i12.
Friedman, Jerome, Robert Tibshirani, and Trevor Hastie. 2010. "Regularization Paths for Generalized Linear Models via Coordinate Descent." Journal of Statistical Software 33 (1): 1–22. https://doi.org/10.18637/jss.v033.i01.
Garnier, Simon, Ross, Noam, Rudis, Robert, Camargo, et al. 2024. viridis(Lite) - Colorblind-Friendly Color Maps for r. https://doi.org/10.5281/zenodo.4679423.
Hamner, Ben, and Michael Frasco. 2018. Metrics: Evaluation Metrics for Machine Learning. https://CRAN.R-project.org/package=Metrics.
Hornik, Kurt, Christian Buchta, and Achim Zeileis. 2009. "Open-Source Machine Learning: R Meets Weka." Computational Statistics 24 (2): 225–32. https://doi.org/10.1007/s00180-008-0119-7.
Horst, Allison Marie, Alison Presmanes Hill, and Kristen B Gorman. 2020. palmerpenguins: Palmer Archipelago (Antarctica) Penguin Data. https://doi.org/10.5281/zenodo.3960218.
Hothorn, Torsten, Kurt Hornik, and Achim Zeileis. 2006. "Unbiased Recursive Partitioning: A Conditional Inference Framework." Journal of Computational and Graphical Statistics 15 (3): 651–74. https://doi.org/10.1198/106186006X133933.
Hothorn, Torsten, and Achim Zeileis. 2015. "partykit: A Modular Toolkit for Recursive Partytioning in R." Journal of Machine Learning Research 16: 3905–9. https://jmlr.org/papers/v16/hothorn15a.html.
Kuhn, and Max. 2008. "Building Predictive Models in r Using the Caret Package." Journal of Statistical Software 28 (5): 1–26. https://doi.org/10.18637/jss.v028.i05.
Liaw, Andy, and Matthew Wiener. 2002. "Classification and Regression by randomForest." R News 2 (3): 18–22. https://CRAN.R-project.org/doc/Rnews/.
Long, Jacob A. 2024. interactions: Comprehensive, User-Friendly Toolkit for Probing Interactions. https://doi.org/10.32614/CRAN.package.interactions.
Meschiari, Stefano. 2022. Latex2exp: Use LaTeX Expressions in Plots. https://CRAN.R-project.org/package=latex2exp.
Meyer, David, Evgenia Dimitriadou, Kurt Hornik, Andreas Weingessel, and Friedrich Leisch. 2024. E1071: Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien. https://CRAN.R-project.org/package=e1071.
Meyer, Patrick E. 2022. infotheo: Information-Theoretic Measures. https://CRAN.R-project.org/package=infotheo.
Molnar, Christoph, Bernd Bischl, and Giuseppe Casalicchio. 2018. "iml: An r Package for Interpretable Machine Learning." JOSS 3 (26): 786. https://doi.org/10.21105/joss.00786.
Nicholas L. Crookston, and Andrew O. Finley. 2007. "yaImpute: An r Package for kNN Imputation." Journal of Statistical Software 23 (10). https://doi.org/10.18637/jss.v023.i10.
Pedersen, Thomas Lin. 2024. patchwork: The Composer of Plots. https://CRAN.R-project.org/package=patchwork.
R Core Team. 2024a. R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing. https://www.R-project.org/.
———. 2024b. R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing. https://www.R-project.org/.
Schloerke, Barret, Di Cook, Joseph Larmarange, Francois Briatte, Moritz Marbach, Edwin Thoen, Amos Elberg, and Jason Crowley. 2024. GGally: Extension to "ggplot2". https://CRAN.R-project.org/package=GGally.
Simon, Noah, Jerome Friedman, Robert Tibshirani, and Trevor Hastie. 2011. "Regularization Paths for Cox's Proportional Hazards Model via Coordinate Descent." Journal of Statistical Software 39 (5): 1–13. https://doi.org/10.18637/jss.v039.i05.
Tay, J. Kenneth, Balasubramanian Narasimhan, and Trevor Hastie. 2023. "Elastic Net Regularization Paths for All Generalized Linear Models." Journal of Statistical Software 106 (1): 1–31. https://doi.org/10.18637/jss.v106.i01.
Therneau, Terry, and Beth Atkinson. 2023. rpart: Recursive Partitioning and Regression Trees. https://CRAN.R-project.org/package=rpart.
Urbanek, Simon. 2022. jpeg: Read and Write JPEG Images. https://CRAN.R-project.org/package=jpeg.
———. 2024. rJava: Low-Level r to Java Interface. https://CRAN.R-project.org/package=rJava.
Venables, W. N., and B. D. Ripley. 2002. Modern Applied Statistics with s. Fourth. New York: Springer. https://www.stats.ox.ac.uk/pub/MASS4/.
von Jouanne-Diedrich, Holger. 2017. OneR: One Rule Machine Learning Classification Algorithm with Enhancements. https://CRAN.R-project.org/package=OneR.
Wickham, Hadley. 2007. "Reshaping Data with the reshape Package." Journal of Statistical Software 21 (12): 1–20. http://www.jstatsoft.org/v21/i12/.
Wickham, Hadley, Mara Averick, Jennifer Bryan, Winston Chang, Lucy D'Agostino McGowan, Romain François, Garrett Grolemund, et al. 2019. "Welcome to the tidyverse." Journal of Open Source Software 4 (43): 1686. https://doi.org/10.21105/joss.01686.
Witten, Ian H., and Eibe Frank. 2005. Data Mining: Practical Machine Learning Tools and Techniques. 2nd ed. San Francisco: Morgan Kaufmann.
Wood, S. N. 2017. Generalized Additive Models: An Introduction with r. 2nd ed. Chapman; Hall/CRC.
Wood, S. N. 2003. "Thin-Plate Regression Splines." Journal of the Royal Statistical Society (B) 65 (1): 95–114.
———. 2004. "Stable and Efficient Multiple Smoothing Parameter Estimation for Generalized Additive Models." Journal of the American Statistical Association 99 (467): 673–86.
———. 2011. "Fast Stable Restricted Maximum Likelihood and Marginal Likelihood Estimation of Semiparametric Generalized Linear Models." Journal of the Royal Statistical Society (B) 73 (1): 3–36.
Wood, S. N., N., Pya, and B. S"afken. 2016. "Smoothing Parameter and Model Selection for General Smooth Models (with Discussion)." Journal of the American Statistical Association 111: 1548–75.
Wright, Marvin N., and Andreas Ziegler. 2017. "ranger: A Fast Implementation of Random Forests for High Dimensional Data in C++ and R." Journal of Statistical Software 77 (1): 1–17. https://doi.org/10.18637/jss.v077.i01.
Xie, Yihui. 2014. "knitr: A Comprehensive Tool for Reproducible Research in R." In Implementing Reproducible Computational Research, edited by Victoria Stodden, Friedrich Leisch, and Roger D. Peng. Chapman; Hall/CRC.
———. 2015. Dynamic Documents with R and Knitr. 2nd ed. Boca Raton, Florida: Chapman; Hall/CRC. https://yihui.org/knitr/.
———. 2024. knitr: A General-Purpose Package for Dynamic Report Generation in r. https://yihui.org/knitr/.
Xie, Yihui, J. J. Allaire, and Garrett Grolemund. 2018. R Markdown: The Definitive Guide. Boca Raton, Florida: Chapman; Hall/CRC. https://bookdown.org/yihui/rmarkdown.
Xie, Yihui, Christophe Dervieux, and Emily Riederer. 2020. R Markdown Cookbook. Boca Raton, Florida: Chapman; Hall/CRC. https://bookdown.org/yihui/rmarkdown-cookbook.
Yang, Hongyu, Cynthia Rudin, and Margo Seltzer. 2016. sbrl: Scalable Bayesian Rule Lists Model. https://CRAN.R-project.org/package=sbrl.
Zeileis, Achim, Torsten Hothorn, and Kurt Hornik. 2008. "Model-Based Recursive Partitioning." Journal of Computational and Graphical Statistics 17 (2): 492–514. https://doi.org/10.1198/106186008X319331.
Zhu, Hao. 2024. kableExtra: Construct Complex Table with "kable" and Pipe Syntax. https://CRAN.R-project.org/package=kableExtra.